Biodiversity Lab Virtual Research Environment

The Biodiversity Lab is designed to provide a collection of applications that allow scholars to perform complete experiments involving single individuals or groups of marine species. This VRE allows to perform the following tasks: Inspect species maps and occurences data, Inspect species descriptions and characteristics, Produce a species distribution map by means of either an expert system (AquaMaps) or a machine learning model, Analyse species observation trends, Cluster occurrence data, Perform analysis of climatic changes and of its effect on species distribution, Produce GIS maps for geo-spatial datasets, Discover Taxa names, Estimate similarities among habitats. In addition to the basic functionality, as a workspace for sharing objects of interest, a social networking area for supporting the discussions among members and a user management facility for managing membership, this VLab is specifically equipped with the following capabilities: Species Data Discovery, a facility enabling users to discover and manage species data products (occurrence data and taxonomic data) from a number of heterogeneous providers (including GBIF and speciesLink for occurrences data, as well as ASFIS, BrazilianFlora, CatalogueOfLife, IRMNG, IT IS, NCBI, WoRDSS, WoRMS for taxonomic data) in a seamless way. Once discovered, objects can be stored in the workspace for future uses; Species View, a facility enabling users to discover and browse species products (namely species distribution maps); Geospatial Data View, a facility enabling users to discover and visualize GIS layers, e.g. species distribution maps that have been generated and published; Data Analytics at Scale, a facility enabling users to benefit from the offerings of the DataMiner service and interactively execute a large array of data analytics tasks on datasets; Algorithm Importer, a facility enabling users to transform R-based algorithms and methods into DataMiner algorithms, i.e. methods that can be executed by the data analytics platform; Data Catalogue, a facility enabling users to access the BlueBRIDGE products catalogue containing, fot he time being, 48.2k species distribution maps; R Studio as-a-Service, a facility enabling users to access a fully-fledged RStudio® working environment directly from the VRE; Semantic-based Data Discovery, a facility enabling users to search and browse the MarineTLO Data Warehouse.

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Additional Info
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About VRE Expiration The VRE expiration date can either be extended or anticipated upon VRE Manager's request. Any of these requests will take one month to be carried out.
Access Policy Public
Acknowledgment Statement This work has received support from the BlueBRIDGE Project (European Union’s Horizon 2020 research and innovation programme, Grant agreement No 675680) and is operated by the D4Science Infrastructure (D4Science.org).
Public page https://bluebridge.d4science.org/web/biodiversitylab
VRE Creation Date November 13, 2015
VRE Expiration Date February 28, 2020
system:type VirtualResearchEnvironment
Management Info
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Author Perciante Costantino
Maintainer Perciante Costantino
Version 1
Last Updated 27 March 2018, 11:41 (CEST)
Created 27 March 2018, 11:41 (CEST)